Conservation genomics of turtle
hi, below is the instruction.
– can you write how you do it on another page, just note for me to understand it because I am going to discuss it in class
about the last question in the instruction. , my term paper is about Conservation genomics of turtle
-file attached, I still working on my term paper so it is not finished.
1. Select one published paper from within the last 6 years, that describes either a) one complete eukaryotic organismal (non-mtDNA) genome sequence or b) a comparative metagenomics paper or multiple (comparative) bacterial genome paper, NOT already discussed or given out in class. You may have to visit the genome website for other ancillary resources not shown in the paper itself. Then summarize the work in 1 page in your own words. Include the following data:
authors
total genome length,
method of sequencing
number of exons (if applicable)
% repetitive DNA to unique DNA
GC content
sequencing center
N50
methods of assembly and annotation
If available, the homepage of the genome
Any unique features in this genome
Indicate reasons and the most interesting features that led you to choose this paper to study
Please upload or email me your written description with a PDF copy of the paper, or place in the Canvas assignment.
You can access several other bioinformatics websites for ideas from the following links:
https://en.wikipedia.org/wiki/List_of_sequenced_animal_genomes
http://img.jgi.doe.gov/cgi-bin/pub/main.cgi
http://www.ncbi.nlm.nih.gov/genome (Links to an external site.)
Ensembl
http://uswest.ensembl.org/index.html
http://www.genomesonline.org/cgi-bin/GOLD/index.cgi
2. Visit one of the following bioinformatics portals portal at the following sites. Set up a free account
MG-RAST
Galaxy
https://galaxyproject.org/
JGI
http://jgi.doe.gov/data-and-tools/genome-portal/ (Links to an external site.)
CyVerse
http://www.cyverse.org/
Test out at least 1-2 apps on one portal, view and apply public data where possible. Describe and report back what you discovered and what was most useful about some of the tools.
Could any be applied to your term paper topic?
